h5vc -- Scalabale nucleotide tallies using HDF5 | Motivation | Nucleotide Tally Definition | A practical example | Ranges interface | Creating tally files | Extracting tallies from the bam files | Checking if everything worked | Mutation Spectrum Analysis | Parallelisation | Using Clusters

Prerequisites | The Data | The Shiny App | ui.R | server.R | Including Variant Calls | Calling the variants | Extending the functionality of the genome browser | Changes to the interface | Changes to the server-side computations | Conclusions